Calibration and validation of the model to observed data

Functions for calibrating and validating a model built with PoPS.

calibrate()

Calibrates the reproductive rate and dispersal scales of the pops model.

validate()

Validates the accuracy of the calibrated reproductive rate and dispersal scales of the pops model.

Running the model

Functions for running a PoPS model.

pops()

PoPS (Pest or Pathogen Spread) model

pops_multirun()

PoPS (Pest or Pathogen Spread) model Multiple Runs

pops_lite()

PoPS Lite Model

Internal data handlers

Functions for error checks and data handling for pops setup

configuration()

PoPS (configuration

pops_model()

PoPS (Pest or Pathogen Spread) model

quantity_allocation_disagreement()

Compares quantity and allocation disagreement of two raster data sets

configuration_qad_lite()

Create PoPS configuration file for quantity allocation and disagreement lite function

quantity_allocation_disagreement_lite()

Calculates quantity and allocation disagreement between two raster datasets. `quantity_allocation_disagreement_lite` functions similarly to `quantity_allocation_disagreement` but uses pre-processed inputs from `config_qad_lite`.