Package index • PoPS

Calibration and validation of the model to observed data

Functions for calibrating and validating a model built with PoPS.

calibrate(): Calibrates the reproductive rate and dispersal scales of the pops model.
validate(): Validates the accuracy of the calibrated model on out of sample data.

Running the model

Functions for running a PoPS model.

pops(): PoPS (Pest or Pathogen Spread) model
pops_simulate(): PoPS Simulate

Internal data handlers

Functions for error checks and data handling for pops setup

configuration(): PoPS (configuration
pops_model(): PoPS (Pest or Pathogen Spread) model
quantity_allocation_disagreement(): Compares quantity and allocation disagreement of two raster data sets
create_summary_stats_and_stacks(): Create summary stats and raster summaries